PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G037100.1.p
Common NameGLYMA_20G037100, LOC100815750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 341aa    MW: 36080.5 Da    PI: 7.5825
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G037100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022121.5e-651132743154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91 
                           gt++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpa++rrerq +  aa+  a  s+ a++ +k++r    ++q+++++++ 
  Glyma.20G037100.1.p 113 GGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLKGVAAAGAAVGSNgATSGAKKPRLV--ASQTTSHTSTS 200
                          57899*********************************************877666655555444367777777765..45555555555 PP

               DUF702  92 ssaeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                          ++++++++++t            lP++v+++avf+cvrv+svdd ge+e+aYq++v+igGhvfkG+LydqG+e+
  Glyma.20G037100.1.p 201 NNTTPPRSFDTGCspqdvgfkesLPSQVRAPAVFKCVRVTSVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 274
                          66777788887767889999999*********************899*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.2E-62115273IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.7E-27117159IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.9E-29224272IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MWPGVSRSFN YNLAPHHDIF VVAPASSFYH HHNDVVLSDP NNNNGSNNSN NPATAHGVNV  60
FPLLTATPCL ESEGIMGNIS HHRNRIQLWQ EHESSPPQQQ QGHMERDTCG DGGGTSTCQD  120
CGNQAKKDCS HRRCRTCCKS RGFDCSTHVK STWVPASRRR ERQLKGVAAA GAAVGSNGAT  180
SGAKKPRLVA SQTTSHTSTS NNTTPPRSFD TGCSPQDVGF KESLPSQVRA PAVFKCVRVT  240
SVDDGGEDEY AYQAVVKIGG HVFKGFLYDQ GVEDKEGYPN LSELHLSGGG GGNVTSGSDG  300
GRNGISSSSP MVDRSHDVYA ASGGGLLLGG SSNYGNHPIN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.438710.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605570.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
RefseqXP_006605571.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK93e-81LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLK7N1880.0K7N188_SOYBN; Uncharacterized protein
STRINGGLYMA20G05015.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-66Lateral root primordium (LRP) protein-related